FastQCFastQC Report
Sat 25 Aug 2018
stdin:GSM2733607_1

Summary

[OK]Basic Statistics

MeasureValue
FilenameGSM2733607_1
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1873276
Sequences flagged as poor quality0
Sequence length38
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT42740.22815644891623016No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT28270.15091209197149807No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTACG308.4211887E-426.66549
GGTATCA7050.019.5282691
GTATCAA18350.019.4546431
ATACCGT2300.016.696646
ACCGTCG2250.016.3547788
TAGGACG2650.015.6990434
CCGTCGT2400.015.3326049
TACCGTC2300.015.3040287
CCGTTAA650.0041627214.76931717
TATGCCG1205.417842E-714.6675355
CTTATAC2250.014.2230633
TCTAGCG1801.1823431E-1014.22154528
GAGTAAT1604.8657967E-914.007561
GTCGTAA700.0068080413.71363430
GTCCTAC4250.013.560261
TCGCGTA952.429226E-413.4730439
ATCGTTT2301.8189894E-1213.21676329
CCCTTAT1701.1397788E-813.1835851
CTAGCGG1954.2018655E-1013.12758129
TCAACGC26450.013.1274314
Produced by FastQC (version 0.11.6.devel)